Korea June 21-22, 2017 The 15th KJC Bioinformatics Symposium, Seoul, Korea

Program book (as of 2017/06/26, Final): PDF icon

2017 photo 1 2017 photo 2

Announcement

We are pleased to announce that "The 15th Korea-Japan-China Bioinformatics Symposium" will be held in Seoul, Korea on June 21-22, 2017. We hope that the symposium will be a prime channel to promote collaboration in bioinformatics in our region.

Outline

Venue

Koreana Hotel, Seoul (home page: English   Japanese   Korean)

Koreana hotel

Schedule

Organizers

Participants

Cost

The attendance fee is free. Local lodging and meals will also be provided by Korea, the hosting country of this year.

Participants

Speakers

China China
Zhiwei Cao
email
Professor Tongji University Searching synergistic drug combinations to treat cancer PDF icon
Tao Huang
email
Associate Professor Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences Deciphering the mechanisms of complex diseases using machine learning and network analysis approaches PDF icon
Yixue Li (Keynote speaker)
email
Professor Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences Genomic analysis reveals hypoxia adaptation in the Tibetan Mastiff by introgression of the gray wolf from the Tibetan plateau
Guangrong Qin
email
Assistant Professor Shanghai Center for Bioinformation Technology Pan-cancer study from multiple omics data analysis
Yi Shi
email
Assistant Professor Shanghai Jiao Tong University Chromatin 3D structure and cancer typing via deep learning PDF icon
Xiaofeng Song
email
Professor Nanjing University of Aeronautics and Astronautics Circular RNA profile in gliomas and human tissues
Chaochun Wei
email
Professor Shanghai Jiao Tong University Pan-genome analysis of ~3000 rice genomes PDF icon
Lu Xie
email
Professor Shanghai Center for Bioinformation Technology Drug synergy study based on network and multi-level annotation PDF icon
Zhi Xie
email
Professor Sun Yat-sen University Tissue-based map of the mouse translatome PDF icon
Yu Xue
email
Professor Huazhong University of Science and Technology PTM bioinformatics PDF icon

Japan Japan
Takashi Gojobori (Keynote speaker)
email
Professor KAUST / Waseda University Arabia Felix: A genomic history of Middle-East human populations and its application to precision medicine
Tadashi Imanishi
email
Professor Tokai University School of Medicine Medical applications of genome sequencing technologies and bioinformatics
Ituro Inoue
email
Professor National Institute of Genetics May the sequencing force be with you PDF icon
Hideaki Kanzawa-Kiriyama
email
Research Scientist National Museum of Nature and Science Genomic insights into the relationship between Neolithic Japanese hunter-gatherer, Jomon, and modern East Eurasians PDF icon
Takashi Makino
email
Associate Professor Tohoku University Duplicated genes maintained after whole genome duplications and their relation to human disorders PDF icon
Katsuhiko Mineta
email
Senior Research Scientist KAUST Shotgun metagenomics of the Red Sea: microbial profiling toward the comparative metagenomics
Yasukazu Nakamura
email
Professor DDBJ Center at National Institute of Genetics Cost and value in data curation for genome databases PDF icon
Hirofumi Nakaoka
email
Assistant Professor National Institute of Genetics Allele specific functional genomics in the post-GWAS era PDF icon
Naruya Saitou
email
Professor National Institute of Genetics Genomic history of modern humans in East Eurasia PDF icon
Yoko Satta
email
Professor The Graduate University for Advanced Studies (SOKENDAI) Phylo-demographic study of primates: problems of the mutation rate and an ancestral population size PDF icon

Korea Korea
Daehyun Baek
email
Assistant Professor Seoul National University General rules for functional microRNA targeting
Jung Kyoon Choi
email
Associate Professor KAIST Convolutional neural networks predict causal regulatory variants PDF icon
Sungwon Jung
email
Assistant Professor Gacheon University Network model-based pathway activity quantification and considerations in personalized drug-response prediction for cancer PDF icon
Sangsoo Kim
email
Professor Soongsil University A few examples of association rule mining in bioinformatics PDF icon
Sanguk Kim (Keynote speaker)
email
Professor POSTECH Evolution of the genotype-phenotype relationship of human disease genes PDF icon
Sangwoo Kim
email
Assistant Professor Yonsei University Accurate detection of low-level somatic mutations using next generation sequencing
Sun Kim
email
Professor Seoul National University Analysis of omics data on the time and phenotype dimensions PDF icon
Insuk Lee
email
Professor Yonsei University Network-based augmenting and interpreting disease genomics data
Semin Lee
email
Assistant Professor UNIST Somatic mutations in single neurons PDF icon
Jin-Wu Nam
email
Associate Professor Hanyang University High-confidence coding and noncoding transcriptome maps PDF icon

Poster presenters

Japan Japan
Junpei Ito Graduate Student National Institute of Genetics Systematic identification of regulatory elements derived from human endogenous retroviruses
Yasuhiro Katahira Graduate Student Tokai University School of Medicine Dramatically increased myelopoiesis in the bone marrow of EBV-infected humanized NOG mice
Kumiko Nishiyama Graduate Student The Graduate University for Advanced Studies (SOKENDAI) An analysis of variation in human dyslexia related genes and association with writing systems
Wanjing Zheng Graduate Student The Graduate University for Advanced Studies (SOKENDAI) Molecular evolution of avian RIG-I-like receptor family

Korea Korea
Tae-Rim Lee Graduate Student Soongsil University R shiny based interactive visualization application for DEG analysis and GWAS
Chaeyeong Choi Graduate Student Soongsil University Discovery of candidate biomarkers using regulatory network analysis of lung cancer RNA-seq data

Staffs

Korea Korea
Ryan Woonbong Kim
email
Director KOBIC
Seungwoo Hwang
email
Senior Researcher KOBIC

Program

All the program activities are held in the State Room conference hall at the 7th floor of Koreana Hotel.

Tuesday, June 20, 2017: Arrival
-18:00 Hotel check-in Lobby
18:00-20:00 Dinner (for those who arrived)
No official ceremony will be held in this time.
Royal Room (7th floor)

Wednesday, June 21, 2017: Symposium Day 1
-08:30 Breakfast (hotel guests only) Danube restaurant (2nd floor)
08:30-09:00 Registration and poster mounting State Room (7th floor)
09:00-09:20 Greetings and announcements
Session 1: Population genomics
09:20-10:00 Keynote presentation 1: Takashi Gojobori, KAUST / Waseda University
Arabia Felix: A genomic history of Middle-East human populations and its application to precision medicine
10:00-10:20 Talk 1: Katsuhiko Mineta, KAUST
Shotgun metagenomics of the Red Sea: microbial profiling toward the comparative metagenomics
10:20-10:40 Talk 2: Hideaki Kanzawa-Kiriyama, National Museum of Nature and Science
Genomic insights into the relationship between Neolithic Japanese hunter-gatherer, Jomon, and modern East Eurasians PDF icon
10:40-11:00 Taking group picture, tea break, and poster mounting
11:00-11:20 Talk 3: Chaochun Wei, Shanghai Jiao Tong University
Pan-genome analysis of ~3000 rice genomes PDF icon
11:20-11:40 Talk 4: Yoko Satta, The Graduate University for Advanced Studies (SOKENDAI)
Phylo-demographic study of primates: problems of the mutation rate and an ancestral population size PDF icon
11:40-12:00 Talk 5: Naruya Saitou, National Institute of Genetics
Genomic history of modern humans in East Eurasia PDF icon
12:00-13:30 Lunch A restaurant outside the hotel (3-minute walk)
Session 2: Transcriptome State Room (7th floor)
13:30-13:50 Talk 6: Zhi Xie, Sun Yat-sen University
Tissue-based map of the mouse translatome PDF icon
13:50-14:10 Talk 7: Xiaofeng Song, Nanjing University of Aeronautics and Astronautics
Circular RNA profile in gliomas and human tissues
14:10-14:30 Talk 8: Jin-Wu Nam, Hanyang University
High-confidence coding and noncoding transcriptome maps PDF icon
14:30-14:50 Talk 9: Daehyun Baek, Seoul National University
General rules for functional microRNA targeting
14:50-15:30 Tea break and poster presentation
Steering Committee Meeting
Session 3: Machine learning and algorithms
15:30-15:50 Talk 10: Yi Shi, Shanghai Jiao Tong University
Chromatin 3D structure and cancer typing via deep learning PDF icon
15:50-16:10 Talk 11: Tao Huang, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
Deciphering the mechanisms of complex diseases using machine learning and network analysis approaches PDF icon
16:10-16:30 Talk 12: Sun Kim, Seoul National University
Analysis of omics data on the time and phenotype dimensions PDF icon
16:30-16:50 Talk 13: Jung Kyoon Choi, KAIST
Convolutional neural networks predict causal regulatory variants PDF icon
16:50-17:10 Talk 14: Sangsoo Kim, Soongsil University
A few examples of association rule mining in bioinformatics PDF icon
17:10-17:20 Tea break
17:20-18:00 Keynote presentation 2: Yixue Li, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences
Genomic analysis reveals hypoxia adaptation in the Tibetan Mastiff by introgression of the gray wolf from the Tibetan plateau
18:00-19:30 Dinner A restaurant outside the hotel (1-minute walk)

Thursday, June 22, 2017: Symposium Day 2
-09:00 Breakfast (hotel guests only) Danube restaurant (2nd floor)
Session 4: Pathway and network State Room (7th floor)
09:00-09:40 Keynote talk 3: Sanguk Kim, POSTECH
Evolution of the genotype-phenotype relationship of human disease genes PDF icon
09:40-10:00 Talk 15: Sungwon Jung, Gacheon University
Network model-based pathway activity quantification and considerations in personalized drug-response prediction for cancer PDF icon
10:00-10:20 Talk 16: Lu Xie, Shanghai Center for Bioinformation Technology
Drug synergy study based on network and multi-level annotation PDF icon
10:20-10:40 Talk 17: Insuk Lee, Yonsei University
Network-based augmenting and interpreting disease genomics data
10:40-11:00 Tea break
Session 5: Medical genomics, disease, and protein bioinformatics
11:00-11:20 Talk 18: Tadashi Imanishi, Tokai University School of Medicine
Medical applications of genome sequencing technologies and bioinformatics
11:20-11:40 Talk 19: Guangrong Qin
Pan-cancer study from multiple omics data analysis
11:40-12:00 Talk 20: Takashi Makino, Tohoku University
Duplicated genes maintained after whole genome duplications and their relation to human disorders PDF icon
12:00-13:00 Lunch Lunchbox at hotel
13:00-13:20 Talk 21: Yu Xue, Huazhong University of Science and Technology
PTM bioinformatics PDF icon
State Room (7th floor)
13:20-13:40 Talk 22: Zhiwei Cao, Tongji University
Searching synergistic drug combinations to treat cancer PDF icon
Session 6: Sequencing and genomics
13:40-14:00 Talk 23: Sangwoo Kim, Yonsei University
Accurate detection of low-level somatic mutations using next generation sequencing
14:00-14:20 Talk 24: Semin Lee, UNIST
Somatic mutations in single neurons PDF icon
14:20-14:40 Tea break
14:40-15:00 Talk 25: Hirofumi Nakaoka, National Institute of Genetics
Allele specific functional genomics in the post-GWAS era PDF icon
15:00-15:20 Talk 26: Yasukazu Nakamura, DDBJ Center at National Institute of Genetics
Cost and value in data curation for genome databases PDF icon
15:20-15:40 Talk 27: Ituro Inoue, National Institute of Genetics
May the sequencing force be with you PDF icon
15:40-15:50 Closing
15:50-17:20 Break Free time
17:30-18:30 Dinner (for those who stay) A restaurant outside the hotel (3-minute walk)

Friday, June 23, 2017: Departure
-10:00 Breakfast Danube restaurant (2nd floor)
-12:00 Check-out from hotel.
Late check-out is maybe available free of charge. Ask hotel check-in counter at the time of check-in.

Travel Information

Which airport to use? (Incheon or Gimpo)

Both Incheon and Gimpo international airports have flights from China and Japan, so you can use either one of them.
Airport Scale Distance to Koreana Hotel Transportation to Koreana Hotel
Incheon Airport Larger and newer 60km Both taxi and limousine bus are available.
  • Taxi: costs around 70,000 Won (430 Yuan / 7,000 Yen)
  • Limousine bus: costs 16,000 Won (100 Yuan / 1,600 Yen)
Gimpo Airport Smaller and older 20km Only taxi is available, costing around 30,000 Won (190 Yuan / 3,000 Yen).

Taking a taxi to the hotel

(1) Take a taxi other than black-colored ones.
DO NOT get a black taxi, which is twice as expensive as taxis of all other colors.
(2) Bring the printout of this to show to the taxi driver
black taxi Koreana hotel sign

Taking a limousine bus: Incheon Airport -> Koreana Hotel

See this instruction: PDF icon http://cjk-bioinfo.org/2017/Taking_a_limousine_bus_to_Koreana_Hotel.pdf

Taking a limousine bus: Koreana Hotel -> Incheon Airport

On your way back home, you can also use the limousine bus from Koreana Hotel back to Incheon Airport. You can buy the bus ticket right at Koreana Hotel reception desk. Purchasing in advance is recommended to secure seats.

Bus stop is right in front of the hotel. There is a bus in every 20-30 minutes. After Koreana Hotel, there are three stops in downtown Seoul, the fourth (and the last) stop being Incheon Airport.
Limousine bus stop Limousine bus time table Limousine bus route

Shopping and sightseeing around the hotel

At the heart of downtown Seoul, there are many shopping and sightseeing places around the hotel within walking distance. Some of the most nearby places are summarized below. Around the hotel

Also refer to the high resolution PDF map of downtown Seoul: PDF icon http://cjk-bioinfo.org/2017/Downtown_Seoul_map.pdf

Contact

Dr. Seungwoo Hwang Senior Researcher
Korean Bioinformation Center
Email: swhwang@kribb.re.kr
Mobile Phone: +82-10-9078-0078

Photos

Photos were taken only on the morning session of June 21.

photo photo photo photo photo photo photo photo

photo photo photo photo photo photo photo photo