Japan August 10-12, 2015 The 13th JCK Bioinformatics Symposium, Okinawa, Japan

Original website: http://www.saitou-naruya-laboratory.org/meetings/EvolutionaryBioinformatics_Aug0015.html

Program and abstract book: PDF icon


Dates: August 10-12, 2015
Venue: OIST Sea Side House, Okinawa, Japan

2015 Group Photo

Seaside House

Okinawa ocean

Organized, sponsored, and hosted by National Institute of Genetics (NIG), Mishima, Japan and Okinawa Institute of Science and Technology (OIST), Okinawa, Japan

Financially supported by

Call for participation of young investigators (closed)

How to apply to this symposium

Young investigators in China should contact Dr. Xie Lu (xielu@scbit.org) at SCBIT.
Young investigators in Korea should contact Dr. Hwang Seungwoo (swhwang@kribb.re.kr) at KOBIC.
Young investigators in Japan and other East Asian countries should contact Dr. Saitou Naruya (saitounr@nig.ac.jp) at NIG.
Around 10 young investigators from each country will be able to attend this symposium.

List of invited speakers

Japan Akashi Hiroshi Professor, Division of Evolutionary Genetics, National Institute of Genetics (NIG), Japan Inferring ancestral DNA sequences under non-stationary models: Methodology and applications
China Chen Runsheng Professor, Institute of Biophysics, Chinese Academy of Sciences, China Noncoding sequence and precision medicine
Japan Gojobori Takashi Distinguished Professor, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Saudi Arabia, and Project Professor, National Institute of Genetics (NIG), Japan Comparative metagenomics: diversities of marine microorganisms between Japan and Saudi Arabia
Japan Ikeo Kazuho Associate Professor, Laboratory for DNA Data Analysis, National Institute of Genetics (NIG), Japan Platform for drug discovery from genome sequence to protein structure
Japan Inoue Ituro Professor, Division of Human Genetics, National Institute of Genetics (NIG), Japan Is "thrifty genotype hypothesis" by Neel still valid?
Korea Kim Jaebum Assistant Professor, Konkuk University, Korea Ancestral genome reconstruction
Korea Kim Ryan Woonbong Director, Korean Bioinformation Center (KOBIC), Korea Building infrastructure for Korean bioresource information management and cloud-based omics data analysis platform
Korea Kim Sangsoo Professor, Soongsil University, Korea Predicting the splicing quantitative trait loci
Korea Kim Sanguk Professor, Pohang University of Sciecen and Technology (POSTECH), Korea Network analysis to understand the process of metazoan evolution
China Li Yixue Professor, Institute of Biochemistry and Cell Biology, Shanghai Institutes of Biological Sciences (SIBS), Chinese Academy of Sciences, China Data mining: driven by functional studies for biology
Japan Nakamura Yasukazu Professor, Genome Informatics Laboratory, National Institute of Genetics (NIG), Japan Towards better genome annotation
Japan Saitou Naruya Professor, Division of Population Genetics, National Institute of Genetics (NIG), Japan Diversity of conserved noncoding sequence evolution among eukaryotes
Japan Satoh Noriyuki Professor, Marine Genomics Unit, Okinawa Institute of Science and Technology (OIST), Japan Horitzontal gene transfer, when and how: a case study of tunicates
Japan Oleg Simakov Molecular Genomics Unit, Okinawa Institute of Science and Technology (OIST), Japan Dynamics of genome architecture evolution across metazoans
Japan Robert Sinclair Okinawa Institute of Science and Technology (OIST), Japan This is not relevant
China Xie Lu Professor and Vice Director, Shanghai Center for Bioinformation Technology (SCBIT), China Identification of protein variants influencing protein abundance levels in breast cancer
China Zhao Guoping Professor, Institute of Plant Physiology and Ecology, Shanghai Institutes of Biological Sciences (SIBS), Chinese Academy of Sciences, China Big BioData vs Small BioCuration

List of selected young speakers

Korea Kim DongHyo Graduate student, Pohang University of Science and Technology, Pohang, Korea The change of Genotype-Phenotype relationship can be explained by rewiring of functional module
Japan Kimura Ryosuke Associate Professor, The University of Ryukyu Medical School, Okinawa, Japan A search for genetic variants associated with 3D facial morphology in Japanese
China Li Ying Associate Professor, Jilin University, Jilin, China Multi-scale RNA comparison
Korea Park Young Chan Graduate student, Hanyang University, Seoul, Korea Structural variants from whole genome sequencing of Korean population
Korea Seo Ji Eun Graduate student, Seoul National University, Seoul, Korea Targeted sequencing using pooled DNA samples to maximize variant discovery power for alzheimer disease susceptibility prediction
China Shi Yi Assistant Professor, Shanghai Jiaotong University, Shanghai, China The building blocks of the genome 3D structure
Japan Urbanczyk Henryk Associate Professor, Faculty of Agriculture, Miyazaki University, Miyazaki, Japan Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics
China Wang Zhen Assistant Professor, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China Whole genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia

List of poster presenters

Korea Poster 01: Cho Kwang Hoon Researcher, Korean Bioinformation Center, Korea Non-tuberculous mycobacteria classification system based on multiple marker genes
Korea Poster 02: Eun Seok Chan Associate Professor, Seoul National University, Korea Business Insight on Bioinformatics
Japan Poster 03: Kawashima Kent Diel Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan Simulating pathogen molecular evolution in epidemics: a graph approach
Korea Poster 04: Lee Moses Graduate student, Seoul National University, Korea Deciphering clonal evolution in a hematopoietic tumor model
China Poster 05: Li Hong Asistant Professor, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, China Relationship estimation from whole-genome sequence data
China Poster 06: Luo Lan Graduate Student, Institute of Computing Technology, Chinese Academy of Sciences, China pTop: improving the searching efficienty for intact protein indentification
China Poster 07: Ma Lili Student, College of Life Science and Technology, Huazhong University of Science and Technology, China MiCroTiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle
Japan Poster 08: Mishra Neha Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan Lineage-specific genome evolution in Drosophila melanogaster subgroup
Korea Poster 09: Park SunHye Graduate student, Hanyang University, Korea Whole genome based variation analysis study in 62 Koreans
China Poster 10: Qin Guangrong Assistant Professor, Shanghai Center for Bioinformation Technology, China Detecting robust DEGs based on gene expression categories
Japan Poster 11: Shokat Shayire Graduate student, SOKENDAI (Graduate University for Advanced Studies) / National Institute of Genetics (NIG), Japan Genetic diversity of Kazakhstan camel population and its evolutionary relationship with the Arabian camel breed
Korea Poster 12: Sohn Sumin Graduate student, Ulsan National Institute of Science and Technology, Korea Comparative genomic study on Myotis formosus
China Poster 13: Wang Yan Associate Professor, Jilin University, China Essential protein identification based on essential protein-protein interaction prediction by integrated edge weights
Korea Poster 14: Yoon Hyejun Graduate student, Ulsan National Institute of Science and Technology, Korea Comparative genomics for aging genes between bowhead and minke whales
Korea Poster 15: Yoo Taekyeong Graduate student, Seoul National University, Korea Understanding phenotypic subdivision using a non-conventional model species
Japan Poster 16: Uchizono Shun Graduate student, Kyushu University Graduate School of Systems Life Sciences, Fukuoka, Japan Characterizing polymorphism in sugar taste sensitivity in a natural population of Drosophila melanogaster
Japan Poster 17 (Selected Short Talk4): Urbanczyk Henryk Faculty of Agriculture, Miyazaki University, Miyazaki, Japan Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics

Program

Symposium will be held at Seminar room of OIST Seaside House 1st floor.
Talk time for invited speakers is 35 min. including questions and discussions.
Talk time for selected young investigators is 20 min. including questions and discussions.
Posters will be put at OIST Seaside House first floor. Size of poster is W880mm X H1,170mm.

All names follow East Asian style: family name (surname) is first, then given name.
Invited speakers will stay at Costa Vista Okinawa Hotel & Spa, and young attendants will stay at OIST Seaside House.

Day 1: Monday, August 10, 2015
13:00-13:30 Registration & Poster preparation
13:30-13:40 Introduction Saitou Naruya (NIG) & Satoh Noriyuki (OIST)
13:40-14:15 Invited Talk 1: Noncoding sequence and precision medicine Chen Runsheng, China
14:15-14:50 Invited Talk 2: Network analysis to understand the process of metazoan evolution Kim Sanguk, Korea
14:50-15:25 Invited Talk 3: Horitzontal gene transfer, when and how: a case study of tunicates Satoh Noriyuki, OIST, Japan
15:25-16:00 Invited Talk 4: Big BioData vs Small BioCuration Zhao Guoping, China
16:00-16:30 Tea Break
16:30-17:05 Invited Talk 5: Predicting the splicing quantitative trait loci Kim Sangsoo, Korea
17:05-17:40 Invited Talk 6: Comparative metagenomics: diversities of marine microorganisms between Japan and Saudi Arabia Gojobori Takashi, KAUST/NIG, Japan
17:40-18:15 Invited Talk 7: Data mining: driven by functional studies for biology Li Yixue, China
18:15-18:50 Invited Talk 8: Building infrastructure for Korean bioresource information management and cloud-based omics data analysis platform Kim Ryan Woonbong, Korea
19:00-20:00 Dinner at Seaside House
20:00-21:00 Poster Presentation 1
Day 2: Tuesday, August 11, 2015
09:00-9:20 Selected Short Talk 1: A search for genetic variants associated with 3D facial morphology in Japanese Kimura Ryosuke, Japan
09:20-9:40 Selected Short Talk 2: Structural variants from whole genome sequencing of Korean population Park Young Chan, Korea
09:40-10:00 Selected Short Talk 3: Whole genome sequencing of six dog breeds from continuous altitudes reveals adaptation to high-altitude hypoxia Wang Zhen, China
10:00-10:35 Invited Talk 9: Towards better genome annotation Nakamura Yasukazu, NIG, Japan
10:35-11:10 Invited Talk 10: Dynamics of genome architecture evolution across metazoans Oleg Simakov, OIST, Japan
11:10-11:45 Invited Talk 11: Identification of protein variants influencing protein abundance levels in breast cancer Xie Lu, China
11:45-14:00 Lunch
14:00-14:35 Invited Talk 12: Is "thrifty genotype hypothesis" by Neel still valid? Inoue Ituro, NIG, Japan
14:35-15:10 Invited Talk 13: Inferring ancestral DNA sequences under non-stationary models: Methodology and applications Akashi Hiroshi, NIG, Japan
15:10-15:45 Invited Talk 14: Ancestral genome reconstruction Kim Jaebum, Korea
15:45-16:20 Invited Talk 15: This is not relevant Robert Sinclair, OIST, Japan
16:20-16:40 Tea Break
16:40-18:30 Poster Presenation 2
18:30-19:00 Move to hotel
19:00-21:00 Banquet at Kafuu Resort Fuchaku Hotel
Day 3: Wednesday, August 12, 2015
09:00-9:20 Selected Short Talk 4: Systematics of "Harveyi clade" bacteria (family Vibrionaceae), using evolutionary bioinformatics Urbanczyk Henryk, Japan
09:20-9:40 Selected Short Talk 5: The change of Genotype-Phenotype relationship can be explained by rewiring of functional module Kim DongHyo, Korea
09:40-10:00 Selected Short Talk 6: The building blocks of the genome 3D structure Shi Yi, China
10:00-10:20 Selected Short Talk 7: Targeted sequencing using pooled DNA samples to maximize variant discovery power for Alzheimer's disease susceptibility prediction Seo Ji Eun, Korea
10:20-10:40 Selected Short Talk 8: Multi-scale RNA comparison Li Ying, China
10:40-11:05 Invited Talk 16: Platform for drug discovery from genome sequence to protein structure Ikeo Kazuho, NIG, Japan
11:05-11:40 Invited Talk 17: Diversity of conserved noncoding sequence evolution among eukaryotes Saitou Naruya, NIG, Japan
11:50-14:00 Lunch & closing ceremony
14:00-15:00 Removal of posters
15:00-16:00 Visit to OIST (optional)

Organizing committee

Gojobori Takashi, Distinguished Professor, Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology (KAUST), Saudi Arabia
Ikeo Kazuho, Associate Professor, Laboratory for DNA Data Analysis, National Institute of Genetics (NIG), Japan
Saitou Naruya, Professor, Division of Population Genetics, National Institute of Genetics (NIG), Japan (Chair)
Satoh Noriyuki, Professor, Okinawa Institute of Science and Technology (OIST), Japan

All informations are updated on August 11th, 2015.