Program book (as of 2016/08/16, Final): 
The CJK Bioinformatics Symposium started in 2002 which aims at promoting bioinformatics research activity in the three Asian countries through scientific exchange, training future talents and exploring new translational biomedical strategies to improve human health.
- General Information
- Invited Speakers
- Selected Young Speakers
- Program
- Travelling Guidance
- Shuttle Bus
- Contact Person
General Information
Time
Registration: August 18th, 2016Symposium: August 19th to 20th, 2016
Venue
Third Institute of Oceanography, State Oceanic Administration, No. 184, Daxue Road, Xiamen, Fujian Province, ChinaBus transportation will be provided between the venue and the accomodation (Peony Wanpeng Hotel)
Organizers and sponsors
Shanghai Center for Bioinformation Technology (SCBIT), Shanghai, China
Third Institute of Oceanography, State Oceanic Administration, Xiamen, Fujian Province, China
Shanghai Society for Bioinformatics, Shanghai, China
Attendants
- Four invited lecturers from each country, 12 in total.
- Two to three local invited speakers from organizer institute.
- Ten young investigators from each of the three countries, 30 in total.
- Young investigators are expected to be either graduate students, or postdocs, or researchers in bioinformatics or a related area, with fluent English.
- All young investigators are expected to present posters. And each country should select THREE representative young investigators to give oral talk at the symposium.
Accommodation
Peony Wanpeng HotelNo. 17, Huyuan Road, Siming District, Xiamen, Fujian Province
Cost and facility
The attendance fee is free. Lecturers and young investigators should cover their own travel expenses. Three days' lodging will be provided by SCBIT includring August 18th, 19th, and 20th.
Invited Speakers
 China
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| Hao Bailin | Professor, T-Life Research Center, Fudan University, Shanghai | Two web servers for prokaryotic phylogeny and taxonomy: Whole-genome-based CVTree3 and 16S rRNA based LVTree Viewer |
| Cao Zhiwei | Professor, Tongji University, Shanghai | Computing antigenicity for influenza |
| Li Yixue | Professor, CAS-PMG Partner Institute for Computational Biology, SIBS/CAS | / |
| Xie Lu | Professor, Shanghai Center for Bioinformation Technology | Multi-omics data integrative analysis and application |
| Shao Zongze | Professor, Third Institute of Oceanography, State Oceanic Administration | Species determination and systematic evolution of marine Bacillus and other bacterial groups |
| Ji Zhiliang | Professor, Xiamen University | Systems computational toxicology in the big data era |
 Japan
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| Saitou Naruya | Professor, National Institute of Genetics | Evolutionarily conserved noncoding sequences in eukaryotes |
| Gojobori Takashi | Professor, KAUST (King Abdullah University of Science and Technology), Saudi Arabia & NIG | A history of Middle East populations from a view point of the integrated whole genome sequence data |
| Inoue Ituro | Professor, National Institute of Genetics | Post-GWAS: allelic imbalance of the transcriptional control |
| Nakamura Yasukazu | Professor, National Institute of Genetics | Approaches and challenges in genome annotation |
 Korea
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| Kim Sangsoo | Professor, Soongsil University | Phasing-based filtering of cancer somatic mutation calls in next generation sequencing |
| Kim Sanguk | Professor, POSTECH (Pohang University of Science and Technology) | Molecular evolution of biological network and genotype-phenotype relationship |
| Nam Dougu | Assistant Professor, UNIST (Ulsan National Institute of Science and Technology) | Differential expression and enrichment analysis of RNA-seq data |
| Lee Insuk | Associate Professor, Yonsei University | Pathway and network-based approaches to human disease research |
| Seungwoo Hwang | Senior Researcher, KOBIC (Korean Bioinformation Center) | / |
List of Selected Young Speakers
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China
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| Huang Tao | Shanghai Institutes for Biological Sciences, CAS | Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma |
| Yang Hao | Key Lab of Intelligent Information Processing, CAS | Open-pNovo: De novo peptide sequencing with thousands of protein modifications |
| Zheng Xiaoqi | Shanghai Normal University | Tumor purity estimation and differential methylation analysis in cancer research |
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Japan
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Korea
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| Lee Tak | Yonsei University | Systematic dissection of crop genetics through network biology |
| Sora Yoon | Ulsan National Institute of Science and Technology | BIMIR: Condition-specific microRNA target prediction using bi-clustering |
Program
Talk time for invited speakers is 35 min. including questions and discussions.Talk time for selected young investigators is 15 min. including questions and discussions.
| Registration: Thursday, August 18th, 2016 Peony Wangpeng Hotel |
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| 13:00-18:00 | Registration at Peony Wangpeng Hotel | |
| 18:30-20:00 | Welcome reception at Peony Wangpeng Hotel | |
| Day 1: Friday, August 19th, 2016 Meeting room: Third Institute of Oceanography |
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| 07:55-08:05 | Gathering at hotel hall for shuttle bus to meeting room Departure time will be 08:05 |
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| 08:30-08:40 | Introduction | Li Yixue & Xie Lu SCBIT |
| 08:40-09:15 | Invited Talk 1: Two web servers for prokaryotic phylogeny and taxonomy: Whole-genome-based CVTree3 and 16S rRNA based LVTree Viewer |
Hao Bailin T-Life Research Center, Fudan University |
| 09:15-09:50 | Invited Talk 2: A history of Middle East populations from a view point of the integrated whole genome sequence data |
Gojobori Takashi KAUST, Saudi Arabia & NIG |
| 09:50-10:25 | Invited Talk 3: Pathway and network-based approaches to human disease research |
Lee Insuk Yonsei University |
| 10:25-11:00 | Invited Talk 4: Computing antigenicity for influenza |
Cao Zhiwei Tongji University |
| 11:00-11:15 | Selected Young Investigators' Talk 1: Identification of novel candidate drivers connecting different dysfunctional levels for lung adenocarcinoma |
Huang Tao Shanghai Institute for Biological Sciences, CAS |
| 11:15-11:30 | Selected Young Investigators' Talk 2: Systematic dissection of crop genetics through network biology |
Lee Tak Yonsei University |
| 11:40-13:00 | Lunch> Ling Hai Xuan Restaurant |
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| 13:00-13:30 | Taking Group Picture & Posters Preparation | |
| 13:30-14:05 | Invited Talk 5: Post-GWAS: allelic imbalance of transcriptional control |
Inoue Ituro National Institute of Genetics |
| 14:05-14:40 | Invited Talk 6: Differential expression and enrichment analysis of RNA-seq data |
Nam Dougu Ulsan National Institute of Science and Technology |
| 14:40-15:15 | Invited Talk 7: Systems computational toxicology in the big data era |
Ji Zhiliang Xiamen University |
| 15:15-15:30 | Tea Break | |
| 15:30-16:05 | Invited Talk 8: Molecular evolution of biologycal network and genotype-phenotype relationship |
Kim Sanguk Pohang University of Science and Technology |
| 16:05-16:20 | Selected Young Investigators' Talk 3: Open-pNovo: De novo peptide sequencing with thousands of protein modifications |
Yang Hao Key Lab of Intelligent Information Processing, CAS |
| 16:200-17:20 | Poster Presentation 1 | |
| 17:20-17:30 | Gathering at meeting room for shuttle bus back to hotel Departure time will be 17:30 |
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| 18:00-19:30 | Dinner Room 18 & 19, 4th floor, Peony Wangpeng Hotel |
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| 19:30-21:00 | Discussion Meeting about next year JKC Bioinformatics Symposium (invited speakers) | |
| Day 2: Saturday, August 20th, 2016 Meeting room: Third Institute of Oceanography |
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| 08:25-08:35 | Gathering at hotel hall for shuttle bus to meeting room Departure time will be 08:35 |
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| 09:00-09:35 | Invited Talk 9: Species discrimination and systematic evolution of marine Bacillus and other bacterial groups |
Shao Zongze Third Institute of Oceanography, State Oceanic Administration |
| 09:35-10:10 | Invited Talk 10: Evolutionarily conserved noncoding sequence in eukaryotes |
Saitou Naruya National Institute of Genetics |
| 10:10-10:45 | Invited Talk 11: Phasing-based filtering of cancer somatic mutation calls in next generation sequencing |
Kim sangsoo Soongsil University |
| 10:45-11:00 | Selected Young Investigators' Talk 4: BIMIR: Condition-specific microRNA target prediction using bi-clustering |
Sora Yoon Ulsan National Institute of Science and Technology |
| 11:00-11:15 | Selected Young Investigators' Talk 5: Tumor purity estimation and differential methylation analysis in cancer research |
Zheng Xiaoqi Shanghai Normal University |
| 11:20-12:40 | Lunch Ling Hai Xuan Restaurant |
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| 12:50-13:50 | Poster Presentation 2 | |
| 13:50-14:25 | Invited Talk 12: Approaches and challenges in genome annotation |
Nakamura Yasukazu National Institute of Genetics, NIG |
| 14:25-15:00 | Invited Talk 13: Multi-omics data integrative analysis and application |
Xie Lu Shanghai Center for Bioinformation Technology |
| 15:00-15:20 | Closing Ceremony | |
| 15:30-17:00 | Visit to Third Institute of Oceanopgraphy, State Oceanic Administration (Optional) | |
| 15:30-15:40 | Those who choose not visit Third Institute of Oceanography Gathering at meeting room for shuttle bus back to hotel Departure time will be 15:40 |
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| 17:00-17:10 | After finishing visiting, another shuttle bus will be arranged to go back to hotel | |
| 18:00-19:30 | Dinner | |
| Day 3: Sunday, August 21st, 2016 Check out from Peony Wangpeng Hotel |
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| 07:00-12:00 | Check out at hotel | |
Travelling Guidance
B: Accommodation & Registration & Welcome Dinner
Peony Wanpeng Hotel No. 17, Huyuan Road, Siming District, Xiamen, Fujian Province
C: Training Course
Third Institute of Oceanography, State Oceanic Administration No. 184, Daxue Road, Xiamen, Fujian Province, China
A—B: 14km
(1) Highly recommended, TAXI (3-4 persons)35-40 min / About 40-45 RMB per person for shared use of a taxi
(2) Not so recommended, BUS
1 hour and 10 minutes / 40 RMB/person
- Airport express shuttle bus: Terminal Building 3 — Xiamen Railway Station (1 stop)
- Bus No.2: Xiamen Railway Station — Yi Zhong Station (5 stops)
- Waking: Yi Zhong Station — Peony Wanpeng Hotel (500 meter)
*For your own safety and convenience, we highly recommend you to go the hotel by taxi. You can also share a taxi with other participants.
B—C: 2.9km
Shuttle Bus
| Date | Departure Time | From | To |
| August 18th | 13:30 | Gaoqi International Airport Terminal 3 | Peony Wanpeng Hotel |
| August 19th | 08:05 | Peony Wanpeng Hotel | Third Institute of Oceanography |
| 17:30 | Third Institute of Oceanography | Peony Wanpeng Hotel | |
| August 20th | 08:35 | Peony Wanpeng Hotel | Third Institute of Oceanography |
| 15:40 | Third Institute of Oceanography | Peony Wanpeng Hotel | |
| 17:00 | Third Institute of Oceanography | Peony Wanpeng Hotel | |
| August 21st | 10:15 | Peony Wanpeng Hotel | Gaoqi International Airport Terminal 3 and Terminal 4 |
- Departure time for shuttle bus will be probably adjusted according to the meeting process and particular situations. If so, the change will be announced during the meeting to all the participants.
- If someone need to go back to hotel in the middle of the day, you can take No.87 Bus.
Hospital of Xiamen University Station — Botanic Garden Station (2 stops/10 min).
Contact Person
Ms. He Qinwen Foreign Affairs SecretaryShanghai Center for Bioinformation Center
Mobile Phone: +86-13816978475
Email: qwhe@scbit.org
Dr. Gong Linfeng
Third Institute of Oceanography
Mobile Phone: +86-13476243619
Dr. Lai Qiliang
Third Institute of Oceanography
Mobile Phone: +86-13459255785